3-hydroxyisobutyrate dehydrogenase

Protein-coding gene in the species Homo sapiens
3-hydroxyisobutyrate dehydrogenase
Identifiers
EC no.1.1.1.31
CAS no.9028-39-1
Databases
IntEnzIntEnz view
BRENDABRENDA entry
ExPASyNiceZyme view
KEGGKEGG entry
MetaCycmetabolic pathway
PRIAMprofile
PDB structuresRCSB PDB PDBe PDBsum
Gene OntologyAmiGO / QuickGO
Search
PMCarticles
PubMedarticles
NCBIproteins
HIBADH
Available structures
PDBOrtholog search: PDBe RCSB
List of PDB id codes

2GF2, 2I9P

Identifiers
AliasesHIBADH, Hibadh, 6430402H10Rik, AI265272, NS5ATP1, 3-hydroxyisobutyrate dehydrogenase
External IDsOMIM: 608475 MGI: 1889802 HomoloGene: 15088 GeneCards: HIBADH
EC number1.1.1.31
Gene location (Human)
Chromosome 7 (human)
Chr.Chromosome 7 (human)[1]
Chromosome 7 (human)
Genomic location for HIBADH
Genomic location for HIBADH
Band7p15.2Start27,525,442 bp[1]
End27,662,883 bp[1]
Gene location (Mouse)
Chromosome 6 (mouse)
Chr.Chromosome 6 (mouse)[2]
Chromosome 6 (mouse)
Genomic location for HIBADH
Genomic location for HIBADH
Band6|6 B3Start52,523,213 bp[2]
End52,617,374 bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • renal medulla

  • kidney

  • left adrenal gland

  • quadriceps femoris muscle

  • vastus lateralis muscle

  • deltoid muscle

  • biceps brachii

  • right ventricle

  • right lobe of liver

  • tibialis anterior muscle
Top expressed in
  • brown adipose tissue

  • epithelium of stomach

  • proximal tubule

  • interventricular septum

  • lacrimal gland

  • myocardium of ventricle

  • left lobe of liver

  • right ventricle

  • digastric muscle

  • white adipose tissue
More reference expression data
BioGPS
More reference expression data
Gene ontology
Molecular function
  • 3-hydroxyisobutyrate dehydrogenase activity
  • oxidoreductase activity
  • NAD binding
  • phosphogluconate dehydrogenase (decarboxylating) activity
  • NADP binding
  • oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
Cellular component
  • mitochondrial matrix
  • mitochondrion
Biological process
  • valine catabolic process
  • branched-chain amino acid catabolic process
Sources:Amigo / QuickGO
Orthologs
SpeciesHumanMouse
Entrez

11112

58875

Ensembl

ENSG00000106049

ENSMUSG00000029776

UniProt

P31937

Q99L13

RefSeq (mRNA)

NM_152740

NM_145567

RefSeq (protein)

NP_689953

NP_663542

Location (UCSC)Chr 7: 27.53 – 27.66 MbChr 6: 52.52 – 52.62 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

In enzymology, a 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31) also known as β-hydroxyisobutyrate dehydrogenase or 3-hydroxyisobutyrate dehydrogenase, mitochondrial (HIBADH) is an enzyme[5] that in humans is encoded by the HIBADH gene.[6]

3-Hydroxyisobutyrate dehydrogenase catalyzes the chemical reaction:

3-hydroxy-2-methylpropanoate + NAD+ {\displaystyle \rightleftharpoons } 2-methyl-3-oxopropanoate + NADH + H+

Thus, the two substrates of this enzyme are 3-hydroxy-2-methylpropanoate and NAD+, whereas its 3 products are 2-methyl-3-oxopropanoate, NADH, and H+.

This enzyme belongs to the family of oxidoreductases, specifically those acting on the CH-OH group of donor with NAD+ or NADP+ as acceptor. The systematic name of this enzyme class is 3-hydroxy-2-methylpropanoate:NAD+ oxidoreductase. This enzyme participates in valine, leucine and isoleucine degradation.

Function

3-hydroxyisobutyrate dehydrogenase is a tetrameric mitochondrial enzyme that catalyzes the NAD+-dependent, reversible oxidation of 3-hydroxyisobutyrate, an intermediate of valine catabolism, to methylmalonate semialdehyde.[6]

Structural studies

As of late 2007, five structures have been solved for this class of enzymes, with PDB accession codes 1WP4, 2CVZ, 2GF2, 2H78, and 2I9P.

References

  1. ^ a b c GRCh38: Ensembl release 89: ENSG00000106049 – Ensembl, May 2017
  2. ^ a b c GRCm38: Ensembl release 89: ENSMUSG00000029776 – Ensembl, May 2017
  3. ^ "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^ "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^ Robinson WG, Coon MJ (March 1957). "The purification and properties of beta-hydroxyisobutyric dehydrogenase". J. Biol. Chem. 225 (1): 511–21. doi:10.1016/S0021-9258(18)64948-8. PMID 13416257.
  6. ^ a b "Entrez Gene: HIBADH 3-hydroxyisobutyrate dehydrogenase".

Further reading

  • Gerhard DS, Wagner L, Feingold EA, et al. (2004). "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)". Genome Res. 14 (10B): 2121–7. doi:10.1101/gr.2596504. PMC 528928. PMID 15489334.
  • Hillier LW, Fulton RS, Fulton LA, et al. (2003). "The DNA sequence of human chromosome 7". Nature. 424 (6945): 157–64. Bibcode:2003Natur.424..157H. doi:10.1038/nature01782. PMID 12853948.
  • Scherer SW, Cheung J, MacDonald JR, et al. (2003). "Human chromosome 7: DNA sequence and biology". Science. 300 (5620): 767–72. Bibcode:2003Sci...300..767S. doi:10.1126/science.1083423. PMC 2882961. PMID 12690205.
  • Mammalian Gene Collection Program Team, Strausberg RL, Feingold EA, Grouse LH, et al. (2002). "Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences". Proceedings of the National Academy of Sciences. 99 (26): 16899–16903. Bibcode:2002PNAS...9916899M. doi:10.1073/pnas.242603899. PMC 139241. PMID 12477932.
  • Sanger Centre T, Washington University Genome Sequencing Cente T (1999). "Toward a complete human genome sequence". Genome Res. 8 (11): 1097–108. doi:10.1101/gr.8.11.1097. PMID 9847074.
  • Hughes GJ, Frutiger S, Paquet N, et al. (1994). "Human liver protein map: update 1993". Electrophoresis. 14 (11): 1216–22. doi:10.1002/elps.11501401181. PMID 8313870. S2CID 33424554.
  • Rougraff PM, Paxton R, Kuntz MJ, et al. (1988). "Purification and characterization of 3-hydroxyisobutyrate dehydrogenase from rabbit liver". J. Biol. Chem. 263 (1): 327–31. doi:10.1016/S0021-9258(19)57396-3. PMID 3335502.
  • Rougraff PM, Zhang B, Kuntz MJ, et al. (1989). "Cloning and sequence analysis of a cDNA for 3-hydroxyisobutyrate dehydrogenase. Evidence for its evolutionary relationship to other pyridine nucleotide-dependent dehydrogenases". J. Biol. Chem. 264 (10): 5899–903. doi:10.1016/S0021-9258(18)83634-1. PMID 2647728.

External links

  • Human HIBADH genome location and HIBADH gene details page in the UCSC Genome Browser.
  • PDBe-KB provides an overview of all the structure information available in the PDB for Human 3-hydroxyisobutyrate dehydrogenase, mitochondrial
  • v
  • t
  • e
  • 2gf2: Crystal structure of human hydroxyisobutyrate dehydrogenase
    2gf2: Crystal structure of human hydroxyisobutyrate dehydrogenase
  • 2i9p: Crystal structure of human hydroxyisobutyrate dehydrogenase complexed with NAD+
    2i9p: Crystal structure of human hydroxyisobutyrate dehydrogenase complexed with NAD+
  • v
  • t
  • e
1.1.1: NAD/NADP acceptor
1.1.2: cytochrome acceptor
  • D-lactate dehydrogenase (cytochrome)
  • D-lactate dehydrogenase (cytochrome c-553)
  • Mannitol dehydrogenase (cytochrome)
1.1.3: oxygen acceptor
1.1.4: disulfide as acceptor
1.1.5: quinone/similar acceptor
1.1.99: other acceptors
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